PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_96DCE1858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 224aa    MW: 25488.7 Da    PI: 8.9881
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_96DCE1858.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.52.1e-083335889
                   FAR1 58 trtgCkaklkvkkekdgkwevtkleleHnHel 89
                            r  C+a+++v +e +++w+v+kle+ HnH+l
  Traes_5BS_96DCE1858.1  3 MREACNAMMEVVRE-SNHWVVSKLEKTHNHKL 33
                           6899********99.9**************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-6333IPR004330FAR1 DNA binding domain
PfamPF105515.4E-29126217IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSMREACNAM MEVVRESNHW VVSKLEKTHN HKLGTCSRVG YLRDRGLLDA SNKITMMGSD  60
GVPFPRQNIL GEGGDAQGLL DYLKKMQAND PAFFHAIQVD KNICLMNVFW ADARAKLAYQ  120
HLGDAVTFDT TYKKNKCMMP FVTFSGVNHH LQRVIFGCAL LMEDTECSFV WLFETWLAAM  180
SGKAPCSLIT DQNRAMKVAI GRVFPHTCHR FCKWHILSRT KHKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238603.11e-146PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5FN431e-171W5FN43_WHEAT; Uncharacterized protein
STRINGMLOC_38921.31e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-59FAR1-related sequence 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]